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diff --git a/academic/cistrome-conductGO/README b/academic/cistrome-conductGO/README new file mode 100644 index 0000000000..a0ff4fb3b5 --- /dev/null +++ b/academic/cistrome-conductGO/README @@ -0,0 +1,24 @@ +The cistrome refers to "the set of cis-acting targets of a trans- +acting factor on a genome-wide scale, also known as the in vivo +genome-wide location of transcription factor binding-sites or histone +modifications". The term cistrome is a portmanteau of cistron + genome +and was coined by investigators at the Dana-Farber Cancer Institute +and Harvard Medical School. + +This is cistrome-conductGO (GO analysis): a galaxy tool to find the +top-n highest expressed TFs. For a list of input genes, this tool uses +R/BioC packages (GO, GOstats) to identify over represented GO terms. + +GO analysis depends on several R script tools (GOstats, GO.db, +hgu133a.db, hgu133b.db, hgu133plus2.db, hgu95av2.db, mouse430a2.db, +celegans.db, drosophila2.db, org.Hs.eg.db, org.Mm.eg.db, org.Ce.eg.db, +org.Dm.eg.db). Visit https://bioconductor.org/ for details and see +"biocondictor.txt" (also copied to the documentation folder of the +created package) for batch installation of the required Bioconductor +Packages. + +NOTE! +This just repackages the script redistributed by the UniPro Ugene +project, part of their External Tools package. This is the reason the +homepage link points to Ugene. The source is hosted on Source Forge by +the SlackBuild maintainer. |