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diff --git a/academic/paml/README b/academic/paml/README new file mode 100644 index 0000000000..5703a8d4d0 --- /dev/null +++ b/academic/paml/README @@ -0,0 +1,18 @@ +PAML: Phylogenetic Analysis by Maximum Likelihood + +PAML is a package of programs for phylogenetic analyses of DNA or +protein sequences using maximum likelihood. PAML is not good for tree +making. It may be used to estimate parameters and test hypotheses to +study the evolutionary process, when you have reconstructed trees +using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc. + +Notes about running of PAML programs and the package: + +- Example datasets are included in /usr/share/paml/examples +- Control files for PAML programs are in /usr/share/paml +- Dcumentation can be found in /usr/doc/paml-$VERSION +- Additional executables are placed in /usr/libexec/paml + +Suggested citation: +Yang, Z. 2007. PAML 4: a program package for phylogenetic analysis by +maximum likelihood. Molecular Biology and Evolution 24: 1586-1591 |