From c8eed62852a3df873fee87de5693eafcaf98d305 Mon Sep 17 00:00:00 2001
From: Petar Petrov <petar.petrov@student.oulu.fi>
Date: Mon, 29 Sep 2014 13:35:06 +0700
Subject: academic/paml: Updated for version 4.8a.

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
---
 academic/paml/README          | 1 -
 academic/paml/paml.SlackBuild | 8 +++++---
 academic/paml/paml.info       | 6 +++---
 academic/paml/slack-desc      | 2 +-
 4 files changed, 9 insertions(+), 8 deletions(-)

(limited to 'academic/paml')

diff --git a/academic/paml/README b/academic/paml/README
index 5703a8d4d0..6cabb5135e 100644
--- a/academic/paml/README
+++ b/academic/paml/README
@@ -10,7 +10,6 @@ Notes about running of PAML programs and the package:
 
 - Example datasets are included in /usr/share/paml/examples
 - Control files for PAML programs are in /usr/share/paml
-- Dcumentation can be found in /usr/doc/paml-$VERSION
 - Additional executables are placed in /usr/libexec/paml
 
 Suggested citation:
diff --git a/academic/paml/paml.SlackBuild b/academic/paml/paml.SlackBuild
index c0c62ef3e2..5c3bc89847 100644
--- a/academic/paml/paml.SlackBuild
+++ b/academic/paml/paml.SlackBuild
@@ -23,7 +23,7 @@
 #  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
 PRGNAM=paml
-VERSION=${VERSION:-4.8}
+VERSION=${VERSION:-4.8a}
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 
@@ -35,6 +35,8 @@ if [ -z "$ARCH" ]; then
   esac
 fi
 
+MAINVER=4.8
+
 CWD=$(pwd)
 TMP=${TMP:-/tmp/SBo}
 PKG=$TMP/package-$PRGNAM
@@ -61,7 +63,7 @@ mkdir -p $TMP $PKG $OUTPUT
 cd $TMP
 rm -rf ${PRGNAM}${VERSION}
 tar xvf $CWD/${PRGNAM}${VERSION}.tgz
-cd ${PRGNAM}${VERSION}
+cd ${PRGNAM}${MAINVER}
 chown -R root:root .
 find -L . \
  \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
@@ -122,7 +124,7 @@ cd ..
 cc -o multiruns $SLKCFLAGS multiruns.c -lm
 install -D -m755 multiruns 	$PKG/usr/libexec/$PRGNAM/multiruns
 
-cd $TMP/${PRGNAM}${VERSION}
+cd $TMP/${PRGNAM}${MAINVER}
 
 # Include sample system files and example experimental data.
 mkdir -p $PKG/usr/share/$PRGNAM/{aa,codon,ctl,dat,nuc,paup,trees}
diff --git a/academic/paml/paml.info b/academic/paml/paml.info
index 1362f9599a..cea138f17e 100644
--- a/academic/paml/paml.info
+++ b/academic/paml/paml.info
@@ -1,9 +1,9 @@
 PRGNAM="paml"
-VERSION="4.8"
+VERSION="4.8a"
 HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html"
-DOWNLOAD="http://abacus.gene.ucl.ac.uk/software/paml4.8.tgz \
+DOWNLOAD="http://abacus.gene.ucl.ac.uk/software/paml4.8a.tgz \
 	http://abacus.gene.ucl.ac.uk/software/MCMCtree.Tutorials.pdf"
-MD5SUM="b99f10ba64da7889f35b68a3dfc99daf \
+MD5SUM="1da1f6c3861b45451cf130961d4bd3e3 \
 	29c851d887eea56b949c01ab42cc48fb"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
diff --git a/academic/paml/slack-desc b/academic/paml/slack-desc
index 3d3aeb22d8..1ec5546349 100644
--- a/academic/paml/slack-desc
+++ b/academic/paml/slack-desc
@@ -16,4 +16,4 @@ paml: reconstructed trees using other programs such as PAUP*, PHYLIP,
 paml: MOLPHY, PhyML, RaxML, etc. 
 paml:
 paml: Home: http://abacus.gene.ucl.ac.uk/software/paml.html
-paml: References: /usr/doc/paml-4.8/References
+paml: References: /usr/doc/paml-4.8a/References
-- 
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