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| author |   Petar Petrov <petar.petrov@student.oulu.fi> | 2015-03-27 15:27:52 +0700 |
|---|---|---|
| committer |   Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2015-03-27 15:27:52 +0700 |
| commit | 3f04be71a0a920e11d5d706875c0a8810a2f685b (patch) | |
| tree | 7f4a44c68dfb826ce2ec38607107563810c9411d /academic/spades/README | |
| parent | 4dec57226a7c8e3f4fbe440769dc42e7b08ef50e (diff) | |
| download | slackbuilds-3f04be71a0a920e11d5d706875c0a8810a2f685b.tar.gz slackbuilds-3f04be71a0a920e11d5d706875c0a8810a2f685b.tar.xz | |
academic/spades: Added (SPAdes Genome Assembler).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/spades/README')
| -rw-r--r-- | academic/spades/README | 16 |
1 files changed, 16 insertions, 0 deletions
diff --git a/academic/spades/README b/academic/spades/README new file mode 100644 index 0000000000..d28dbb956e --- /dev/null +++ b/academic/spades/README @@ -0,0 +1,16 @@ +SPAdes: a single-cell genome assembler + +SPAdes (St. Petersburg genome assembler) is intended for both standard +isolates and single-cell MDA bacteria assemblies. + +SPAdes generates single-cell assemblies, providing information about +genomes of uncultivatable bacteria that vastly exceeds what may be +obtained via traditional metagenomics studies. + +Citing: +Nurk S et al. Assembling Single-Cell Genomes and Mini-Metagenomes From +Chimeric MDA Products. Journal of Computational Biology 20(10) (2013), +714-737. doi:10.1089/cmb.2013.0084 + +NOTE! +This will not build on a 32bit system. |